Genotyping of a core collection of 163 tomato accessions composed of S. lycopersicum, S. lycopersicum var cerasiforme, and Solanum pimpinellifolium.The orginal was in SL2.40 genome version, this is intranslated to SL4.00
The SNP calling rate threshold per locus was set at 90%. A 0.037 <MAF< 0.45 was used to filter the raw data set. The minimal success rate of genotyping per accession was fixed to 90%. The missing data were imputed by the most common allele of the SNP