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Genotyping Platform Details
Genotyping Platform Basic Information
Method Class:
Genotyping by array
Name:
SOLCAP_TOMATO_7K_SL4.0
Description:
6907 markers of Tomato Infinium Array SOLCAP_TOMATO_8K_SL2.40 mapped to Solanum lycopersicum built 4.0 .
Ref Set Name:
Solanum lycopersicum build_SL4.0
Reference Set Published Date:
30/11/2018
Marker Count:
6907
Method Description, Sequencing Instrument & Reference
Method Description:
SOLCAP_TOMATO_8K_SL2.40 maker positions were mapped to Solanum lycopersicum built 4.0 by SGN( https://solgenomics.net/)
Sequencing Instrument:
Infinium HD Ultra
Var Call Software:
GenomeStudio software
Assembly PUI:
https://solgenomics.net/ftp//genomes/Solanum_lycopersicum/assembly/build_4.00/
Bio Project ID:
Publication Reference:
1) doi: https://doi.org/10.1101/767764
Related Variant Set Meta data Summary
2
Name
Vriant Count
VCF Name
MM-TO937RILset_SOLCAP_SL4.0
Variantset_MM-TO937RILset_SOLCAP_SL4.0.vcf
GWAS_Tomato_Sauvage2014_genotyping_SOLCAP_SL4.00
5935
GWAS_Tomato_Sauvage2014_genotyping_SL4.00.vcf
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