HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview

Germplasm Summary

Accessions
3733

Mapping Populations
1

Experiment Summary

Trials
7

Studies
27

Phenotyping Summary

Observations Variables
175

Metabolites
872

Genotyping Summary

Markers
122087

Genotyping Platforms
4

Variant Studies

QTL Studies
3

GWAS
8

Variant Summary

QTL Variant
21

GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRVA0120

Longitudinal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Longitudinal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Longitudinal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Transversal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Transversal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Transversal section of TRVA0120 red ripe fruits in PERELLO_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVA0120

Flower of TRVA0120 in PERELLO_summer15

Anatomical Entity: flower

TRVA0120

Flower of TRVA0120 in PERELLO_summer15

Anatomical Entity: flower

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.