HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview | The database is being used for training from March 4th to March 5th included

Germplasm Summary

Accessions
1906

Mapping Populations
1

Experiment Summary

Trials
6

Studies
24

Phenotyping Summary

Observations Variables
175

Metabolites
870

Genotyping Summary

Markers
122083

Genotyping Platforms
4

Variant Studies

QTL Studies
3

GWAS
8

Variant Summary

QTL Variant
21

GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRCA0960

The appearance of whole TRCA0960 plant in ALCALAX_summer15

Anatomical Entity: whole plant

TRCA0970

Longitudinal section of TRCA0970 red ripe fruits in ALCALAX_summer15

Stage: Red ripe Anatomical Entity: fruit

TRCA0970

Transversal section of TRCA0970 red ripe fruits in ALCALAX_summer15

Stage: Red ripe Anatomical Entity: fruit

TRCA0970

Flower of TRCA0970 in ALCALAX_summer15

Anatomical Entity: flower

TRCA0970

Flower of TRCA0970 in ALCALAX_summer15

Anatomical Entity: flower

TRCA0970

TRCA0970 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRCA0970

TRCA0970 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRCA0970

TRCA0970 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.