HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview

Germplasm Summary

Accessions
1907
Mapping Populations
1

Experiment Summary

Trials
6
Studies
25

Phenotyping Summary

Observations Variables
175
Metabolites
872

Genotyping Summary

Markers
122083
Genotyping Platforms
4

Variant Studies

QTL Studies
3
GWAS
8

Variant Summary

QTL Variant
21
GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRVA1470

TRVA1470 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRVA1470

TRVA1470 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRVA1470

Inflorescence of TRVA1470 in ALCALAX_summer15

Anatomical Entity: inflorescence

TRVA1470

Inflorescence of TRVA1470 in ALCALAX_summer15

Anatomical Entity: inflorescence

TRVA1470

Inflorescence of TRVA1470 in ALCALAX_summer15

Anatomical Entity: inflorescence

TRVA1470

Inflorescence of TRVA1470 in ALCALAX_summer15

Anatomical Entity: inflorescence

TRVA1470

The appearance of whole TRVA1470 plant in ALCALAX_summer15

Anatomical Entity: whole plant

TRVA1480

Longitudinal section of TRVA1480 red ripe fruits in ALCALAX_summer15

Stage: Red ripe Anatomical Entity: fruit

Type of experiment used in HarnessTomDB

Breeding project 50 %

Variety trial 33 %

Environmental factor trial 17 %

Survey for designing your ideal tomato

How would you like tomatoes to be? Red, orange, pink, purple, green… ribbed, smooth… pear-shaped, round, flat… very sweet or very acid or both? It’s time to design your perfect tomato! After different research projects we have studied more than 3,000 varieties of tomato. Do you want to help us select the best varieties? It will only take you 5 minutes to answer this survey, but the information that you will provide will last for thousand years… Let’s go?

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.