HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview

Germplasm Summary

Accessions
1907

Mapping Populations
1

Experiment Summary

Trials
6

Studies
25

Phenotyping Summary

Observations Variables
175

Metabolites
872

Genotyping Summary

Markers
122083

Genotyping Platforms
4

Variant Studies

QTL Studies
3

GWAS
8

Variant Summary

QTL Variant
21

GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRBA1570

Longitudinal section of TRBA1570 red ripe fruits in ALCALAX_summer15

Stage: Red ripe Anatomical Entity: fruit

TRBA1570

Transversal section of TRBA1570 red ripe fruits in ALCALAX_summer15

Stage: Red ripe Anatomical Entity: fruit

TRBA1570

Flower of TRBA1570 in ALCALAX_summer15

Anatomical Entity: flower

TRBA1570

TRBA1570 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRBA1570

TRBA1570 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRBA1570

TRBA1570 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRBA1570

TRBA1570 fruits in ALCALAX_summer15

Stage: fruit ripening stage Anatomical Entity: fruit

TRBA1570

Inflorescence of TRBA1570 in ALCALAX_summer15

Anatomical Entity: inflorescence

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.