Details

Study Basic Information

ACTYMPAKY_autumn15
Phenotypic characterization of Greek TRADITOM subset in ACTYMPAKY field (Messara Plain, Creete, Greece) during autum 2015
Phenotypic evaluation of 76 traits related to plant architecture, fruit shape, size, colour and quality and GWAS analysis
summer

Study Location Information

ACTYMPAKY
Agrotobiomchanikos Synetairismos Tympakioy
GRC
Private
greenhouse study
Culture in open field with drip system through hose with 10 cm holes. Plant spacing: single row 1,30 m x 0,50 m (1,5 plants/sq m) for indeterminate and semideterminate varieties; single row 1 m x 0,30 m (3,3 plants/sq m) for determinate varieties.
"Soil preparation: plowing in March and milling in April. During the cultivation time we performed soil harrowing and soil tamping. Staking: chestnut wood stake and zinc coated iron wire. Nutrient management: manuring soil 50 t/ha (middle february, 2 months before the transplanting); during the cultivation time: • Nitrogen 79 kg/ha (ammonium sulphate 260 kg/ha and monoammonium phosphate 200 kg/ha) in 4 different moments of the fert-irrigation; • Phosphorus 122 kg/ha (monoammonium phosphate 200 kg/ha) in 2 different moments of the fert-irrigation; • Magnesium 12 kg/ha (magnesium sulphate 75 kg/ha) in 3 different moments of the fert-irrigation; • Microelement complex (Fe, Mn, Zn, B, Mo) in 3 different moments, method of fertigation; • Calcium (calcium oxide) from middle june to middle august in 4 different moments, through foliar feeding. Irrigation:s: n° 43 times; total irrigation volume: 5800 m3/ha; rain during the cultivation time: 1880 m3/ha; Disease/insect control: n° 14 interventions. active ingredients for crop protection fungicides : Metalaxil-M, Cymoxanil, Copper, Phosethyl-Al, Azoxistrobin insecticides : Thiamethoxam, Imidacloprid, Chlorpyrifos, Cypermethrin, Chlorantraniliprole, Spinosad, Emamectin-benzoate, Indoxacarb; acaricides : Abamectin, Tebufenpyrad; To protect from weed we executed 3 manual weeding operations. "

1) Clay(%) = 17.4
2) EC(dS/m) = 7.78
3) Fine silt(%) = 0
4) Nitrogen(kg ha-1) = 190
5) Organic matter content(% dry matter basis) = 2.05
6) pH(dimensionless) = 7.72
7) Phosphate(kg ha-1) = 122
8) Potassium(kg ha-1) = 0
9) Silt(%) = 34.4
10) Total sand (%) = 48.2
11) USDA Soil texture classe(dimensionless) = Sandy silt
12) air temperature maximum value(degree Celsius) = 28.8
13) air temperature minimum value(degree Celsius) = 15.6
14) air temperature mean value(degree Celsius) = 22.2

Experimental Design Information

Plot design
Each plot corresponded to one accession
Observation units consited on individual plots or plants in plots. Plots consisting in a row of 6 plants

Related GWAS Summary 1

GWAS Name ID Software GWAS Model
GWAS_ACTYMPAKY_autumn15 R/GAPIT Mixed linear model (MLM)

Related Germplasms Summary 137

Germplasm ID INSTCODE Accession
TRTH0120 GGB KD-226/07
TRTH0130 GGB GR030/06
TRTH0140 GGB ANP-193/07
TRTH0160 GGB ATS-019/06-2
TRTH0180 GGB ANP-088/07
TRTH0190 GGB ANP-179/07
TRTH0200 GGB ANP-182/07
TRTH0210 GGB ANP-236/07
TRTH0220 GGB AO-023/07
TRTH0240 GGB AO-037/07
TRTH0250 AUTh TRTH0250
TRTH0260 AUTh TRTH0260
TRTH0280 AUTh TRTH0280
TRTH0290 AUTh TRTH0290
TRTH0300 AUTh TRTH0300
TRTH0340 GGB MFS-106/07
TRTH0350 GGB IS-100/07
TRTH0360 GGB XKA-087/07
TRTH0380 GGB IS-009/07
TRTH0400 GGB GR058/05
TRTH0470 GGB KD-086/07
TRTH0480 GGB GR006/07
TRTH0500 GGB GR003/08
TRTH0510 GGB GR006/08
TRTH0530 GGB GR017/06
TRTH0540 GGB GR018/06
TRTH0550 GGB GR019/06
TRTH0560 GGB GR031/06
TRTH0590 GGB GR1112/04
TRTH0600 GGB GR1113A/04
TRTH0610 GGB GR1113C/04
TRTH0620 GGB GR1113D/04
TRTH0630 GGB GR1388/04
TRTH0640 GGB GR1389/04
TRTH0650 GGB GR1480/04
TRTH0660 GGB GR1594/04
TRTH0670 GGB GR445/04
TRTH0680 GGB GR448/04
TRTH0690 GGB GR448/04-2
TRTH0700 GGB GR452/04
TRTH0710 GGB GR488/04
TRTH0720 GGB GR491/04
TRTH0740 GGB HL-057/07
TRTH0790 GGB IK-134/06
TRTH0810 AUTh TRTH0810
TRTH0820 GGB IS-002/07
TRTH0830 GGB IS-025/07
TRTH0840 GGB IS-026/07
TRTH0850 GGB IS-026/07-2
TRTH0860 GGB IS-026/07-3
TRTH0870 GGB IS-032/07
TRTH0880 GGB IS-034/07
TRTH0900 GGB IS-074/07
TRTH0920 GGB IS-103/07
TRTH0930 GGB IS-141/07
TRTH0940 GGB IS-145/07
TRTH0950 GGB IS-189/07
TRTH0970 GGB XKA-031/07
TRTH0990 GGB KThI-040/07
TRTH1010 AUTh TRTH1010
TRTH1040 GGB F-157/06
TRTH1130 GGB ANP-135/07
TRTH1160 GGB SAS-100/07
TRTH1210 GGB KD-143/07
TRTH1220 GGB KD-241/07
TRTH1230 GGB KD-249/07
TRTH1300 GGB LKK-034/07
TRTH1330 GGB HL-073/07
TRTH1400 GGB GR451/04
TRTH1410 GGB KThI-002/07
TRTH1420 GGB KThI-077/07
TRTH1430 GGB KThI-078/07
TRTH1440 GGB KThI-079/07
TRTH1460 AUTh TRTH1460
TRTH1480 GGB GR047/05
TRTH1510 AUTh TRTH1510
TRTH1520 AUTh TRTH1520
TRTH1540 GGB LKK-092/07
TRTH1550 GGB M-055/06
TRTH1560 GGB M-059/06
TRTH1580 GGB M-105/06
TRTH1610 GGB M-138β/06
TRTH1620 GGB M-149/06
TRTH1650 GGB M-186a/06
TRTH1670 AUTh TRTH1670
TRTH1680 AUTh TRTH1680
TRTH1700 AUTh TRTH1700
TRTH1710 AUTh TRTH1710
TRTH1740 GGB SAS-030/07
TRTH1750 GGB ANP-001/07
TRTH1760 GGB ANP-016/07
TRTH1790 GGB GR031/05
TRTH1810 GGB KD-289/07
TRTH1830 GGB ANP-110/07
TRTH1840 GGB ANP-110/07-2
TRTH1860 GGB IS-001/07
TRTH1880 GGB IS-030/07
TRTH1930 GGB GR073/05
TRTH1940 AUTh TRTH1940
TRTH1950 GGB P-040/06
TRTH1970 GGB P-080/06
TRTH2040 GGB P-249/06
TRTH2050 GGB KD-228/07
TRTH2060 GGB GR026/05
TRTH2090 GGB IS-033/07
TRTH2100 GGB GR492/04
TRTH2110 AUTh TRTH2110
TRTH2130 GGB RK-016/07-2
TRTH2150 GGB MFS-006/07
TRTH2170 GGB ROX-041/07
TRTH2190 AUTh TRTH2190
TRTH2280 GGB GR198/08
TRTH2330 GGB SAS-056/07
TRTH2340 GGB SAS-068/07
TRTH2360 GGB SAS-070/07
TRTH2410 GGB SK-045/06
TRTH2440 GGB SK-053/06-3
TRTH2490 GGB GR034/05
TRTH2500 GGB GR033/05
TRTH2510 GGB GR033/05-2
TRTH2520 GGB GR033/05-3
TRTH2530 GGB GR012/05
TRTH2550 GGB T-010/06
TRTH2610 GGB T-427/06
TRTH2630 AUTh TRTH2630
TRTH2650 GGB T-525/06
TRTH2670 GGB GR057/05
TRTH2750 GGB GR490/04
TRTH2840 GGB X-052/06
TRTH2850 GGB XKA-059/07
TRTH2870 GGB XKA-057/07
TRTH2880 GGB XKA-061/07
TRTH2890 GGB XKA-061/07-2
TRTH2900 GGB XKA-061/07-3
TRTH2920 GGB XKA-090/07
TRTH2930 AUTh TRTH2930
TRTH2980 AUTh TRTH2980