Details

Study Basic Information

ARCA2010_summer15
Phenotypic characterization of TRPO and TRPA TRADITOM subset in ARCA2010 field Acerra, Italy) during summer 2015
Phenotypic evaluation of 76 traits related to plant architecture, fruit shape, size, colour and quality and GWAS analysis
summer

Study Location Information

ARCA2010
ARCA 2010 Societa Cooperativa A.r.l.
ITA
Private
field study
Culture in open field with drip system through hose with 10 cm holes. Plant spacing: single row 1,30 m x 0,50 m (1,5 plants/sq m) for indeterminate and semideterminate varieties; single row 1 m x 0,30 m (3,3 plants/sq m) for determinate varieties.
Soil preparation: plowing in March and milling in April. During the cultivation time we performed soil harrowing and soil tamping. Staking: chestnut wood stake and zinc coated iron wire. Nutrient management: manuring soil 50 t/ha (middle february, 2 months before the transplanting); during the cultivation time: • Nitrogen 79 kg/ha (ammonium sulphate 260 kg/ha and monoammonium phosphate 200 kg/ha) in 4 different moments of the fert-irrigation; • Phosphorus 122 kg/ha (monoammonium phosphate 200 kg/ha) in 2 different moments of the fert-irrigation; • Magnesium 12 kg/ha (magnesium sulphate 75 kg/ha) in 3 different moments of the fert-irrigation; • Microelement complex (Fe, Mn, Zn, B, Mo) in 3 different moments, method of fertigation; • Calcium (calcium oxide) from middle june to middle august in 4 different moments, through foliar feeding. Irrigation:s: n° 43 times; total irrigation volume: 5800 m3/ha; rain during the cultivation time: 1880 m3/ha; Disease/insect control: n° 14 interventions. active ingredients for crop protection fungicides : Metalaxil-M, Cymoxanil, Copper, Phosethyl-Al, Azoxistrobin insecticides : Thiamethoxam, Imidacloprid, Chlorpyrifos, Cypermethrin, Chlorantraniliprole, Spinosad, Emamectin-benzoate, Indoxacarb; acaricides : Abamectin, Tebufenpyrad; To protect from weed we executed 3 manual weeding operations.

1) Nitrogen(kg ha-1) = 190
2) Phosphate(kg ha-1) = 122
3) Potassium(kg ha-1) = 0
4) Clay(%) = 10.3
5) EC(dS/m) = 0.07
6) Organic matter content(% dry matter basis) = 2.2
7) pH(dimensionless) = 7.2
8) Total sand (%) = 58.8
9) USDA Soil texture classe(dimensionless) = sandy loam
10) air temperature maximum value(degree Celsius) = 36
11) air temperature minimum value(degree Celsius) = 7
12) air temperature mean value(degree Celsius) = 24.5

Experimental Design Information

Plot design
Each plot corresponded to one accession
Observation units consited on individual plots or plants in plots. Plots consisting in a row of 6 plants

Related GWAS Summary 1

GWAS Name ID Software GWAS Model
GWAS_ARCA2010_summer15 R/GAPIT Mixed linear model (MLM)

Related Germplasms Summary 254

Germplasm ID INSTCODE Accession
TRCA0010 FMA-UPC LC433
TRCA0020 FMA-UPC LC95
TRIS0010 REHOVOT DZ 52
TRIS0020 REHOVOT 9457 cherry
TRIS0030 REHOVOT 9466 jj
TRMO0010 INRAe-AVIGNON T100534
TRMO0020 INRAe-AVIGNON T100938
TRMO0030 INRAe-AVIGNON T101774
TRMO0040 INRAe-AVIGNON T101948
TRPA0110 UNIPA-SAAF ANDREA_LAMP
TRPA0130 UNIPA-SAAF LINOSA
TRPA0140 UNIPA-SAAF PATATARO
TRPA0150 UNIPA-SAAF PIRIDDU
TRPA0160 UNIPA-SAAF PIZZ_NUBIA
TRPA0170 UNIPA-SAAF Popolazione POP_10
TRPA0180 UNIPA-SAAF Popolazione POP_9
TRPA0200 UNIPA-SAAF Popolazione POP_14
TRPA0210 UNIPA-SAAF Popolazione POP_20
TRPA0220 UNIPA-SAAF Popolazione POP_21
TRPA0230 UNIPA-SAAF Popolazione POP_24
TRPA0240 UNIPA-SAAF Popolazione POP_26
TRPA0260 UNIPA-SAAF Popolazione POP_3
TRPA0270 UNIPA-SAAF SINACORI
TRPA0280 UNIPA-SAAF STELLA
TRPA0290 UNIPA-SAAF Popolazione POP_6
TRPA0310 UNIPA-SAAF Popolazione POP_13
TRPA0320 UNIPA-SAAF Popolazione POP_29
TRPA0330 UNIPA-SAAF Popolazione POP_17
TRPA0340 UNIPA-SAAF Popolazione POP_18
TRPA0350 UNIPA-SAAF Popolazione POP_19
TRPA0380 UNIPA-SAAF Popolazione POP_1
TRPA0390 UNIPA-SAAF NANISSIMO
TRPA0400 UNIPA-SAAF LOCALE_SERBO_TP
TRPO0010 IBBR-CNR-Portici TRPO0010
TRPO0020 ARCA2010 TRPO0020
TRPO0030 ARCA2010 TRPO0030
TRPO0040 ARCA2010 TRPO0040
TRPO0110 ARCA2010 TRPO0110
TRPO0120 ARCA2010 TRPO0120
TRPO0130 ARCA2010 TRPO0130
TRPO0140 ARCA2010 TRPO0140
TRPO0150 ARCA2010 TRPO0150
TRPO0160 ARCA2010 TRPO0160
TRPO0170 ARCA2010 K 01
TRPO0180 ARCA2010 24 SMEC
TRPO0190 ARCA2010 TRPO0190
TRPO0200 ARCA2010 TRPO0200
TRPO0210 ARCA2010 TRPO0210
TRPO0220 ARCA2010 TRPO0220
TRPO0230 IBBR-CNR-Portici SR- 1
TRPO0240 IBBR-CNR-Portici SR- 3
TRPO0250 IBBR-CNR-Portici SR- 6
TRPO0260 IBBR-CNR-Portici SR- 7
TRPO0270 IBBR-CNR-Portici SR-8
TRPO0280 IBBR-CNR-Portici SR-12
TRPO0290 IBBR-CNR-Portici SR-15
TRPO0300 IBBR-CNR-Portici SR-19
TRPO0310 IBBR-CNR-Portici SR-20
TRPO0320 IBBR-CNR-Portici SR-22
TRPO0330 IBBR-CNR-Portici SR-26
TRPO0340 IBBR-CNR-Portici SR-27
TRPO0350 IBBR-CNR-Portici SR-42
TRPO0360 IVALSA-CNR Follonica IVALSA -1
TRPO0370 IVALSA-CNR Follonica IVALSA -2
TRPO0380 IVALSA-CNR Follonica IVALSA -3
TRPO0390 IVALSA-CNR Follonica IVALSA -4
TRPO0400 IVALSA-CNR Follonica IVALSA -5
TRPO0410 IVALSA-CNR Follonica IVALSA -6
TRPO0420 IVALSA-CNR Follonica IVALSA -7
TRPO0430 IVALSA-CNR Follonica IVALSA -8
TRPO0440 IVALSA-CNR Follonica IVALSA -9
TRPO0450 IVALSA-CNR Follonica IVALSA -10
TRPO0460 IVALSA-CNR Follonica IVALSA -11
TRPO0470 IVALSA-CNR Follonica IVALSA -12
TRPO0480 IVALSA-CNR Follonica IVALSA -13
TRPO0490 IVALSA-CNR Follonica IVALSA -14
TRPO0500 IVALSA-CNR Follonica IVALSA -15
TRPO0510 IVALSA-CNR Follonica IVALSA -16
TRPO0520 IVALSA-CNR Follonica IVALSA -17
TRPO0530 IVALSA-CNR Follonica IVALSA -18
TRPO0540 IVALSA-CNR Follonica IVALSA -19
TRPO0550 IVALSA-CNR Follonica IVALSA 28
TRPO0560 IVALSA-CNR Follonica IVALSA 35
TRPO0570 IVALSA-CNR Follonica IVALSA 37
TRPO0580 IVALSA-CNR Follonica IVALSA -41
TRPO0590 IVALSA-CNR Follonica IVALSA 42
TRPO0600 IVALSA-CNR Follonica IVALSA - 44
TRPO0610 IVALSA-CNR Follonica IVALSA - 45
TRPO0620 IBBR-CNR-Portici SR-51
TRPO0640 IBBR-CNR-Portici SR-53
TRPO0650 IBBR-CNR-Portici TRPO0650
TRPO0660 IBBR-CNR-Portici TRPO0660
TRPO0670 IBBR-CNR-Portici TRPO0670
TRPO0680 IBBR-CNR-Portici TRPO0680
TRPO0690 IBBR-CNR-Portici TRPO0690
TRPO0700 IBBR-CNR-Portici TRPO0700
TRPO0720 IBBR-CNR-Portici TRPO0720
TRPO0740 IBBR-CNR-Portici TRPO0740
TRPO0750 IBBR-CNR-Portici TRPO0750
TRPO0760 IBBR-CNR-Portici TRPO0760
TRPO0770 IBBR-CNR-Portici TRPO0770
TRPO0780 IBBR-CNR-Portici TRPO0780
TRPO0790 IBBR-CNR-Portici TRPO0790
TRPO0800 IBBR-CNR-Portici TRPO0800
TRPO0810 IBBR-CNR-Portici TRPO0810
TRPO0820 IBBR-CNR-Portici TRPO0820
TRPO0830 IBBR-CNR-Portici TRPO0830
TRPO0840 IBBR-CNR-Portici TRPO0840
TRPO0860 IBBR-CNR-Portici TRPO0860
TRPO0890 IPK LYC 280
TRPO0900 IPK LYC 281
TRPO0940 IPK LYC 438
TRPO0950 IPK LYC 439
TRPO0960 IPK LYC 440
TRPO0970 IPK LYC 441
TRPO0980 IPK LYC 442
TRPO0990 IPK LYC 443
TRPO1000 IPK LYC 444
TRPO1010 IPK LYC 446
TRPO1030 IPK LYC 448
TRPO1040 IPK LYC 449
TRPO1050 IPK LYC 450
TRPO1080 IPK LYC 453
TRPO1090 IPK LYC 454
TRPO1100 IPK LYC 455
TRPO1150 IPK LYC 1741
TRPO1160 IPK LYC 1742
TRPO1170 IPK LYC 1743
TRPO1190 IPK LYC 1746
TRPO1220 IPK LYC 1817
TRPO1230 IPK LYC 1818
TRPO1270 IPK LYC 1823
TRPO1280 IPK LYC 1824
TRPO1320 IPK LYC 1884
TRPO1340 IPK LYC 1886
TRPO1350 IPK LYC 1887
TRPO1370 IPK LYC 1889
TRPO1390 IPK LYC 1891
TRPO1400 IPK LYC 1892
TRPO1410 IPK LYC 1893
TRPO1420 IPK LYC 1895
TRPO1430 IPK LYC 1896
TRPO1440 IPK LYC 1897
TRPO1450 IPK LYC 1898
TRPO1460 IPK LYC 1899
TRPO1470 IPK LYC 1903
TRPO1480 IPK LYC 1904
TRPO1490 IPK LYC 1905
TRPO1510 IPK LYC 1907
TRPO1520 IPK LYC 1908
TRPO1530 IPK LYC 1909
TRPO1540 IPK LYC 1910
TRPO1550 IPK LYC 1911
TRPO1590 IPK LYC 1915
TRPO1610 IPK LYC 1917
TRPO1620 IPK LYC 1918
TRPO1630 IPK LYC 1920
TRPO1650 IPK LYC 1922
TRPO1690 IPK LYC 1916
TRPO1720 IPK LYC 2456
TRPO1730 IPK LYC 2400
TRPO1750 IPK LYC 2523
TRPO1760 IPK LYC 2673
TRPO1790 IPK LYC 2894
TRPO1910 IPK LYC 3080
TRPO1920 IPK LYC 3082
TRPO1930 IPK LYC 3083
TRPO1940 IPK LYC 3084
TRPO1950 IPK LYC 3085
TRPO1960 IPK LYC 3086
TRPO1970 IPK LYC 3093
TRPO1980 IPK LYC 3094
TRPO1990 IPK LYC 3095
TRPO2000 IPK LYC 3096
TRPO2010 IPK LYC 3174
TRPO2020 IPK LYC 3187
TRPO2030 IPK LYC 3188
TRPO2040 IPK LYC 3189
TRPO2050 IPK LYC 3190
TRPO2060 IPK LYC 3227
TRPO2070 IPK LYC 3228
TRPO2080 IPK LYC 3229
TRPO2090 IPK LYC 3230
TRPO2100 IPK LYC 2569
TRPO2110 IPK LYC 3231
TRPO2120 IPK LYC 3232
TRPO2130 IPK LYC 3233
TRPO2140 IPK LYC 3240
TRPO2150 IPK LYC 3241
TRPO2170 IPK LYC 3243
TRPO2180 IPK LYC 3249
TRPO2190 IPK LYC 3257
TRPO2200 IPK LYC 3258
TRPO2210 IPK LYC 3268
TRPO2220 IPK LYC 3269
TRPO2230 IPK LYC 3270
TRPO2240 IPK LYC 2570
TRPO2250 IPK LYC 3295
TRPO2260 IPK LYC 3296
TRPO2270 IPK LYC 3297
TRPO2280 IPK LYC 3310
TRPO2290 IPK LYC 2571
TRPO2300 IPK LYC 3361
TRPO2310 IPK LYC 3362
TRPO2320 IPK LYC 3363
TRPO2330 IPK LYC 3364
TRPO2340 IPK LYC 3365
TRPO2350 IPK LYC 3398
TRPO2360 IPK LYC 3399
TRPO2370 IPK LYC 3400
TRPO2380 IPK LYC 3401
TRPO2390 IPK LYC 3402
TRPO2410 IPK LYC 3404
TRPO2420 IPK LYC 2572
TRPO2430 IPK LYC 3405
TRPO2440 IPK LYC 3406
TRPO2450 IPK LYC 3415
TRPO2460 IPK LYC 3443
TRPO2470 IPK LYC 2573
TRPO2490 IPK LYC 3446
TRPO2520 IPK LYC 3484
TRPO2530 IPK LYC 3485
TRPO2540 IPK LYC 3544
TRPO2550 IPK LYC 3545
TRPO2560 IPK LYC 3546
TRPO2570 IPK LYC 3610
TRPO2580 IPK LYC 3611
TRPO2590 IPK LYC 3612
TRPO2600 IPK LYC 3613
TRPO2610 IPK LYC 3630
TRPO2620 IPK LYC 3631
TRPO2630 IPK LYC 3632
TRPO2640 IPK LYC 3633
TRPO2650 IPK LYC 3634
TRPO2670 IPK LYC 3925
TRPO2680 IPK LYC 3926
TRPO2690 IPK LYC 3927
TRPO2700 IPK LYC 3928
TRPO2710 IPK LYC 3929
TRPO2720 IPK LYC 3930
TRPO2730 IPK LYC 3931
TRPO2740 IPK LYC 2575
TRTH0010 AUTh TRTH0010
TRTH0020 AUTh TRTH0020
TRTH0030 AUTh TRTH0030
TRVA0010 BGUPV BGV005643
TRVA0020 COMAV PE1
TRVA0030 COMAV ALX1
TRVI0010 ITA062 V710148
TRVI0020 ITA062 V710150
TRVI0030 ITA062 V710171
TRVI0040 ITA062 V710301
TRVI0050 ITA062 V710314
TRVI0060 ITA062 V711278