Details

Study Basic Information

GARBI1_summer15
Phenotypic characterization of Spanish TRADITOM processing and long shelf life subset in GARBI1 field (Malgrat de Mar, Barcelona,Spain) during summer 2015
Phenotypic evaluation of 76 traits related to plant architecture, fruit shape, size, colour and quality and GWAS analysis
summer

Study Location Information

GARBI1
Progrés Garbí
ESP
Private
field study
Culture in open field with local irrigation. Distance between rows 0.8m. Distance between plants 0.5m.
Plants were pruned every 15 days and supported vertically with canes. Weeds were managed manually. Pest and diseases were controlled using an integrated pest management strategy.

1) USDA Soil texture classe(dimensionless) = sandy loam
2) Clay(%) = 9.2
3) EC(dS/m) = 0.143
4) Fine silt(%) = 11.5
5) Nitrogen(kg ha-1) = 400
6) Organic matter content(% dry matter basis) = 1
7) pH(dimensionless) = 7.34
8) Phosphate(kg ha-1) = 150
9) Potassium(kg ha-1) = 600
10) Silt(%) = 9
11) Total sand (%) = 70.3
12) air temperature maximum value(degree Celsius) = 37.8
13) air temperature minimum value(degree Celsius) = 16.8
14) air temperature mean value(degree Celsius) = 25.5

Experimental Design Information

Plot design
Each plot corresponded to one accession
Observation units consited on individual plots or plants in plots. Plots consisting in a row of 5 plants

Related GWAS Summary 1

GWAS Name ID Software GWAS Model
GWAS_GARBI1_summer15 R/GAPIT Mixed linear model (MLM)

Related Germplasms Summary 154

Germplasm ID INSTCODE Accession
TRBA0200 UIBFCB UIB0012
TRBA0300 UIBFCB UIB0022
TRBA0750 UIBFCB UIB0068
TRBA0830 UIBFCB UIB0077
TRBA1020 UIBFCB UIB0096
TRBA1030 UIBFCB UIB0097
TRBA1460 UIBFCB UIB0140
TRBA1480 UIBFCB UIB0142
TRBA1490 UIBFCB UIB0143
TRBA1500 UIBFCB UIB0144
TRBA1510 UIBFCB UIB0145
TRBA1590 UIBFCB UIB0154
TRBA1600 UIBFCB UIB0155
TRBA1610 UIBFCB UIB0156
TRBA1630 UIBFCB UIB0158
TRBA1650 UIBFCB UIB0160
TRBA1690 UIBFCB UIB0165
TRBA1710 UIBFCB UIB0167
TRBA1720 UIBFCB UIB0168
TRBA1740 UIBFCB UIB0170
TRBA1750 UIBFCB UIB0171
TRBA1760 UIBFCB UIB0172
TRBA1770 UIBFCB UIB0173
TRBA1790 UIBFCB UIB0175
TRBA1800 UIBFCB UIB0176
TRBA1810 UIBFCB UIB0177
TRBA1870 UIBFCB UIB0184
TRBA1890 UIBFCB UIB0186
TRBA1900 UIBFCB UIB0187
TRBA1920 UIBFCB UIB0190
TRBA1960 UIBFCB UIB0194
TRBA1970 UIBFCB UIB0195
TRBA1980 UIBFCB UIB0196
TRBA1990 UIBFCB UIB0197
TRCA0010 FMA-UPC LC433
TRCA0020 FMA-UPC LC95
TRCA0110 FMA-UPC BGHZ4817
TRCA0120 FMA-UPC BGV002124
TRCA0130 FMA-UPC BGV002125
TRCA0140 FMA-UPC BGV002127
TRCA0150 FMA-UPC BGV002036
TRCA0160 FMA-UPC BGV002038
TRCA0170 FMA-UPC BGV002040
TRCA0180 FMA-UPC BGV002223
TRCA0190 FMA-UPC BGV002225
TRCA0200 FMA-UPC BGV002232
TRCA0210 FMA-UPC BGV002239
TRCA0220 FMA-UPC BGV002241
TRCA0230 FMA-UPC BGV002242
TRCA0240 FMA-UPC BGV002245
TRCA0250 FMA-UPC BGV002250
TRCA0260 FMA-UPC BGV002253
TRCA0270 FMA-UPC BGV002278
TRCA0280 FMA-UPC BGV002050
TRCA0290 FMA-UPC BGV002052
TRCA0300 FMA-UPC BGV002074
TRCA0310 FMA-UPC BGV002029
TRCA0320 FMA-UPC BGV002089
TRCA0330 FMA-UPC BGV002106
TRCA0340 FMA-UPC BGV002113
TRCA0350 FMA-UPC BGV002117
TRCA0360 FMA-UPC BGV002119
TRCA0370 FMA-UPC BGV002120
TRCA0380 FMA-UPC BGV002138
TRCA0400 FMA-UPC BGV002148
TRCA0410 FMA-UPC BGV002150
TRCA0420 FMA-UPC BGV002152
TRCA0430 FMA-UPC BGV002158
TRCA0440 FMA-UPC BGV002190
TRCA0480 FMA-UPC BGV002231
TRCA0530 FMA-UPC BGV016088
TRCA0550 FMA-UPC BGV016091
TRCA0560 FMA-UPC LC117
TRCA0580 FMA-UPC LC137
TRCA0590 FMA-UPC LC144
TRCA0600 FMA-UPC LC147
TRCA0610 FMA-UPC LC148
TRCA0620 FMA-UPC LC149
TRCA0630 FMA-UPC LC154
TRCA0640 FMA-UPC LC157
TRCA0650 FMA-UPC LC158
TRCA0660 FMA-UPC LC159
TRCA0670 FMA-UPC LC160
TRCA0680 FMA-UPC LC165
TRCA0690 FMA-UPC LC166
TRCA0700 FMA-UPC LC167
TRCA0710 FMA-UPC LC180
TRCA0720 FMA-UPC LC184
TRCA0730 FMA-UPC LC189
TRCA0740 FMA-UPC LC190
TRCA0750 FMA-UPC LC191
TRCA0760 FMA-UPC LC192
TRCA0770 FMA-UPC LC194
TRCA0780 FMA-UPC LC195
TRCA0790 FMA-UPC LC196
TRCA0800 FMA-UPC LC200
TRCA0810 FMA-UPC LC203
TRCA0900 FMA-UPC LC322
TRCA0910 FMA-UPC LC325
TRCA0920 FMA-UPC LC328
TRCA0930 FMA-UPC LC333
TRCA0940 FMA-UPC LC334
TRCA0950 FMA-UPC LC335
TRCA1070 FMA-UPC LC412
TRCA1080 FMA-UPC LC413
TRCA1110 FMA-UPC LC427
TRCA1120 FMA-UPC LC430
TRCA1150 FMA-UPC LC436
TRCA1160 FMA-UPC LC437
TRCA1170 FMA-UPC LC438
TRCA1200 FMA-UPC LC442
TRCA1230 FMA-UPC FMA105
TRCA1250 FMA-UPC FMA13
TRCA1260 FMA-UPC FMA16
TRCA1270 FMA-UPC FMA17
TRCA1290 FMA-UPC FMA174
TRCA1310 FMA-UPC FMA198
TRCA1320 FMA-UPC FMA213
TRCA1330 FMA-UPC FMA217
TRCA1340 FMA-UPC FMA235
TRCA1370 FMA-UPC FMA32
TRCA1380 FMA-UPC FMA36
TRCA1390 FMA-UPC FMA45
TRCA1400 FMA-UPC FMA46
TRCA1410 FMA-UPC FMA55
TRCA1430 FMA-UPC FMA75
TRCA1440 FMA-UPC FMA77
TRCA1470 FMA-UPC FMA44
TRCA1480 FMA-UPC FMA19
TRIS0010 REHOVOT DZ 52
TRIS0020 REHOVOT 9457 cherry
TRIS0030 REHOVOT 9466 jj
TRMO0010 INRAe-AVIGNON T100534
TRMO0020 INRAe-AVIGNON T100938
TRMO0030 INRAe-AVIGNON T101774
TRMO0040 INRAe-AVIGNON T101948
TRPO0010 IBBR-CNR-Portici TRPO0010
TRPO0020 ARCA2010 TRPO0020
TRPO0030 ARCA2010 TRPO0030
TRPO0040 ARCA2010 TRPO0040
TRTH0010 AUTh TRTH0010
TRTH0020 AUTh TRTH0020
TRTH0030 AUTh TRTH0030
TRVA0010 BGUPV BGV005643
TRVA0020 COMAV PE1
TRVA0030 COMAV ALX1
TRVA1320 BGUPV BGV005430
TRVA2710 BGUPV BGHZ5019
TRVI0010 ITA062 V710148
TRVI0020 ITA062 V710150
TRVI0030 ITA062 V710171
TRVI0040 ITA062 V710301
TRVI0050 ITA062 V710314
TRVI0060 ITA062 V711278