Details

Study Basic Information

INRA_summer15
Phenotypic characterization of French TRADITOM subset in INRA 15 field (Avignon,Provence, France) during summer 2015
Phenotypic evaluation of 76 traits related to plant architecture, fruit shape, size, colour and quality and GWAS analysis
summer

Study Location Information

INRA
Avingnon_INRA
FRA
Private
greenhouse study
Culture in open ground under plastic tunnel, with mulshing film and drip system. The greeenhose contains 6 lines (56 meters/134 plants per line) with a distance of 0,4 meter per plant
Irrigation according to the needs of the plants.Manual weeding

1) Clay(%) = 28.5
2) EC(dS/m) = 0.465
3) Fine silt(%) = 27.7
4) Nitrogen(kg ha-1) = 124.8
5) Organic matter content(% dry matter basis) = 2.75
6) pH(dimensionless) = 7.6
7) Phosphate(kg ha-1) = 152.9
8) Potassium(kg ha-1) = 307.1
9) Silt(%) = 10.6
10) Total sand (%) = 33.2
11) USDA Soil texture classe(dimensionless) = clay-loam
12) air temperature maximum value(degree Celsius) = 44
13) air temperature minimum value(degree Celsius) = 6
14) air temperature mean value(degree Celsius) = 24

Experimental Design Information

Plot design
Each plot corresponded to one accession
Observation units consited on individual plots or plants in plots. Plots consisting in a row of 6 plants separated by 0.4 meter

Related GWAS Summary 1

GWAS Name ID Software GWAS Model
GWAS_INRA_summer15 R/GAPIT Mixed linear model (MLM)

Related Germplasms Summary 159

Germplasm ID INSTCODE Accession
TRCA0010 FMA-UPC LC433
TRCA0020 FMA-UPC LC95
TRIS0010 REHOVOT DZ 52
TRIS0020 REHOVOT 9457 cherry
TRIS0030 REHOVOT 9466 jj
TRMO0010 INRAe-AVIGNON T100534
TRMO0020 INRAe-AVIGNON T100938
TRMO0030 INRAe-AVIGNON T101774
TRMO0040 INRAe-AVIGNON T101948
TRMO0110 INRAe-AVIGNON T100001
TRMO0120 INRAe-AVIGNON T100027
TRMO0130 INRAe-AVIGNON T100028
TRMO0140 INRAe-AVIGNON T100036
TRMO0150 INRAe-AVIGNON T100037
TRMO0160 INRAe-AVIGNON F101379
TRMO0170 INRAe-AVIGNON T101768
TRMO0180 INRAe-AVIGNON F101759
TRMO0190 INRAe-AVIGNON T100085
TRMO0200 INRAe-AVIGNON T100100
TRMO0210 INRAe-AVIGNON T101987
TRMO0220 INRAe-AVIGNON T100131
TRMO0230 INRAe-AVIGNON T100133
TRMO0240 INRAe-AVIGNON T100140
TRMO0250 INRAe-AVIGNON F100160
TRMO0260 INRAe-AVIGNON F100161
TRMO0270 INRAe-AVIGNON T100164
TRMO0280 INRAe-AVIGNON T100190
TRMO0290 INRAe-AVIGNON F101773
TRMO0300 INRAe-AVIGNON T101685
TRMO0310 INRAe-AVIGNON F100304
TRMO0320 INRAe-AVIGNON T100312
TRMO0330 INRAe-AVIGNON T100313
TRMO0340 INRAe-AVIGNON F100314
TRMO0350 INRAe-AVIGNON F100315
TRMO0360 INRAe-AVIGNON T101766
TRMO0370 INRAe-AVIGNON F100333
TRMO0380 INRAe-AVIGNON T102018
TRMO0390 INRAe-AVIGNON T100436
TRMO0400 INRAe-AVIGNON F100437
TRMO0410 INRAe-AVIGNON T100454
TRMO0420 INRAe-AVIGNON T100486
TRMO0430 INRAe-AVIGNON T102044
TRMO0440 INRAe-AVIGNON F100500
TRMO0450 INRAe-AVIGNON T102948
TRMO0460 INRAe-AVIGNON F100529
TRMO0470 INRAe-AVIGNON T100532
TRMO0480 INRAe-AVIGNON F100533
TRMO0490 INRAe-AVIGNON T101636
TRMO0510 INRAe-AVIGNON T101421
TRMO0520 INRAe-AVIGNON F101423
TRMO0530 INRAe-AVIGNON F100335
TRMO0540 INRAe-AVIGNON F101430
TRMO0550 INRAe-AVIGNON T100538
TRMO0560 INRAe-AVIGNON T101391
TRMO0570 INRAe-AVIGNON F100563
TRMO0580 INRAe-AVIGNON T100565
TRMO0590 INRAe-AVIGNON T100571
TRMO0600 INRAe-AVIGNON T100603
TRMO0610 INRAe-AVIGNON T100604
TRMO0620 INRAe-AVIGNON TRMO0620
TRMO0630 INRAe-AVIGNON T101674
TRMO0640 INRAe-AVIGNON T101657
TRMO0650 INRAe-AVIGNON T101680
TRMO0670 INRAe-AVIGNON F100706
TRMO0680 INRAe-AVIGNON T100729
TRMO0690 INRAe-AVIGNON T103139
TRMO0700 INRAe-AVIGNON F100736
TRMO0710 INRAe-AVIGNON T100765
TRMO0720 INRAe-AVIGNON T100766
TRMO0730 INRAe-AVIGNON T101253
TRMO0740 INRAe-AVIGNON F102101
TRMO0750 INRAe-AVIGNON T101560
TRMO0760 INRAe-AVIGNON T101569
TRMO0770 INRAe-AVIGNON T101559
TRMO0780 INRAe-AVIGNON T100806
TRMO0790 INRAe-AVIGNON T100811
TRMO0800 INRAe-AVIGNON F100819
TRMO0810 INRAe-AVIGNON F100823
TRMO0820 INRAe-AVIGNON F100825
TRMO0830 INRAe-AVIGNON T100863
TRMO0840 INRAe-AVIGNON T100885
TRMO0850 INRAe-AVIGNON F101450
TRMO0860 INRAe-AVIGNON F100900
TRMO0870 INRAe-AVIGNON F100901
TRMO0880 INRAe-AVIGNON T102119
TRMO0890 INRAe-AVIGNON T100906
TRMO0900 INRAe-AVIGNON T100909
TRMO0910 INRAe-AVIGNON T100910
TRMO0920 INRAe-AVIGNON T102642
TRMO0930 INRAe-AVIGNON T100920
TRMO0940 INRAe-AVIGNON T102992
TRMO0950 INRAe-AVIGNON T101687
TRMO0960 INRAe-AVIGNON T102127
TRMO0970 INRAe-AVIGNON T102639
TRMO0980 INRAe-AVIGNON T101009
TRMO0990 INRAe-AVIGNON F101019
TRMO1000 INRAe-AVIGNON F101036
TRMO1010 INRAe-AVIGNON F101037
TRMO1020 INRAe-AVIGNON T101635
TRMO1030 INRAe-AVIGNON T101672
TRMO1040 INRAe-AVIGNON TRMO1040
TRMO1050 INRAe-AVIGNON T103047
TRMO1060 INRAe-AVIGNON T101403
TRMO1070 INRAe-AVIGNON T101764
TRMO1080 INRAe-AVIGNON T101406
TRMO1090 INRAe-AVIGNON F101121
TRMO1100 INRAe-AVIGNON F101140
TRPO0010 IBBR-CNR-Portici TRPO0010
TRPO0020 ARCA2010 TRPO0020
TRPO0030 ARCA2010 TRPO0030
TRPO0040 ARCA2010 TRPO0040
TRTH0010 AUTh TRTH0010
TRTH0020 AUTh TRTH0020
TRTH0030 AUTh TRTH0030
TRVA0010 BGUPV BGV005643
TRVA0020 COMAV PE1
TRVA0030 COMAV ALX1
TRVA0170 BGUPV BGV000902
TRVA0290 BGUPV BGV000970
TRVA0300 BGUPV BGV000973
TRVA0360 BGUPV BGV001012
TRVA0460 BGUPV BGV001334
TRVA0510 BGUPV BGV001572
TRVA0540 BGUPV BGV002047
TRVA0590 BGUPV BGV002097
TRVA0800 BGUPV BGV002991
TRVA0900 BGUPV BGV003098
TRVA1010 BGUPV BGV003866
TRVA1050 BGUPV BGV003919
TRVA1140 BGUPV BGV004381
TRVA1150 BGUPV BGV004384
TRVA1180 BGUPV BGV004463
TRVA1220 BGUPV BGV004522
TRVA1650 BGUPV BGV005530
TRVA1710 BGUPV BGV005561
TRVA1810 BGUPV BGV005623
TRVA1870 BGUPV BGV005644
TRVA2180 BGUPV BGV009555
TRVA2230 BGUPV BGV009792
TRVA2250 BGUPV BGHZ0035
TRVA2260 BGUPV BGHZ0567
TRVA2280 BGUPV BGHZ3571
TRVA2290 BGUPV BGHZ2450
TRVA2300 BGUPV BGHZ3149
TRVA2460 BGUPV BGHZ3804
TRVA2510 BGUPV BGV014435
TRVA2540 BGUPV BGV014535
TRVA2640 BGUPV BGV014985
TRVA2650 BGUPV BGV014993
TRVA2660 BGUPV BGV014995
TRVA2690 BGUPV BGV015054
TRVA2730 BGUPV BGV015613
TRVA2740 BGUPV BGV015615
TRVI0010 ITA062 V710148
TRVI0020 ITA062 V710150
TRVI0030 ITA062 V710171
TRVI0040 ITA062 V710301
TRVI0050 ITA062 V710314
TRVI0060 ITA062 V711278