Features
Interface
Advanced Search
Data Submission
Overview:
Guide
Bulk Data Request
Download Template
Create »
Experimental »
Program
Trial
Study
Sample
Observation Level
Germplasm »
Germplasm
Cross
Collection
Collecting Mission
Accession
Attribute
Attribute Trait Value
Pedigree
Mapping Population
Phenotyping »
Metabolite
Analyte
Traits
Observation Value
Observation Variable Method
Observation Variable
Genotyping »
Markers
Genotyping Platform
Variants »
Metadata »
Create
Search
Variant Set »
Create
Search
Variant Catalogue »
QTL Study
GWAS
GWAS Variant
QTL Variant
Download
Data:
Experimental
Germplasm
Phenotyping
Genotyping
Variant
API Docs
More
Statistics
Tools
Gourmetom
Easy GDB
Tools:
Search
BLAST
Genome Browser
Sequence Extraction
Annotation Extraction
BRAPPS
Graphical Filtering
Study Comparison
Tools *
Data Submission »
New Request
Download Template
Download »
Data »
Experimental
Germplasm
Phenotyping
Genotyping
Variant
Ontology »
Experimental Data Ontologies »
Crop »
Create
Search
Trial Type »
Create
Search
Factor »
Create
Search
Season »
Create
Search
Growth Facility Type »
Create
Search
Experimental Design Type »
Create
Search
Germplasm Ontologies »
Collecting Source »
Create
Search
Biological Status »
Create
Search
MLS Status »
Create
Search
Taxonomy »
Create
Search
Storage type »
Create
Search
Attribute Category »
Create
Search
Attribute »
Create
Search
Breeding Method »
Create
Search
Generation »
Create
Search
Phenotyping Ontologies »
Anatomical Entity »
Create
Search
Developmental Stage »
Create
Search
Trait »
Create
Search
Metabolic Trait »
Create
Search
Analyte Identification Level »
Create
Search
Analyte Annotation Level »
Create
Search
Metabolite Class »
Create
Search
Analyte Health & Flavor »
Create
Search
Observation Variable Method Class »
Create
Search
Data Type »
Create
Search
Scale Category »
Create
Search
Genotyping Ontologies »
Sequencing Instrument »
Create
Search
Sequencing Type »
Create
Search
Variant Call Software »
Create
Search
Enzyme »
Create
Search
Genetic Analysis Software »
Create
Search
Variant Ontologies »
Variant Association Software »
Create
Search
QTL Method »
Create
Search
Ci Criteria »
Create
Search
QTL Statistic »
Create
Search
GWAS Model »
Create
Search
Kinship Algorithm »
Create
Search
Structure Method »
Create
Search
Genetic Testing Model »
Create
Search
Allelic Effect Estimator »
Create
Search
GWAS Stat Test »
Create
Search
Trait Preprocessing »
Create
Search
Threshold Method »
Create
Search
Country »
Create
Search
Institute »
Create
Search
Unit »
Create
Search
Synonym »
Create
Search
More »
Contact »
Create
Search
Location »
Create
Search
Experimental Data
Program »
Create
Search
Trial »
Create
Search
Study »
Create
Search
Sample »
Create
Search
Observation Level »
Create
Search
Germplasm
Species »
Search
Germplasm »
Create
Search
Cross »
Create
Search
Collection »
Create
Search
Collecting Mission »
Create
Upload From Excel
Search
Accession »
Create
Search
Attribute »
Create
Search
Attribute Trait Value »
Create
Search
Pedigree »
Create
Search
Mapping Population »
Create
Search
Phenotyping Data
Metabolite »
Create
Search
Metabolite Value »
Create
Search
Analyte »
Create
Search
Traits »
Create
Search
Observation Value »
Create
Search
Observation Value GOURMETOM »
Observation Variable Method »
Create
Search
Observation Variable »
Create
Search
Genotyping Data
Markers »
Create
Search
Genotyping Platform »
Create
Search
Variants »
Metadata »
Create
Search
Variant Set »
Create
Search
Variant Catalogue
QTL Study »
Create
Search
GWAS Study »
Create
Search
GWAS Variant »
Create
Search
QTL Variant »
Create
Search
QTL Epistatis »
Create
Search
Login
GWAS Variant Details
GWAS Variant Basic Information
Name:
par.RSL2.50ch11V3
gwas Study:
GWAS_PERELLO_summer15
MAF:
0.4194313
Sample Size:
211
SNP P Value:
1.458645E-5
Adjusted P Value:
0.009301803
Allelic Effect:
-0.03915956
Allelic Effect Stat:
Allelic Effect DF:
Allelic Effect StdE:
Beta:
Beta StdE:
Marker, Trait Preprocessing & More
Metabolite:
Observation Variable:
Tomato Pericarp Area Ratio
Marker:
SL2.50ch11p55069352
Odds Ratio:
R Square Of Mode:
R Square Of Mode With SNP:
0.4537222
R Square Of Mode Without SNP:
0.3971383
Reference Allele:
a
Ci Lower:
Ci Upper:
Data Upload
×
Data are uploading!
Your data are being uploaded, please wait and check back later.
Ready to Leave?
×
Select "Logout" below if you are ready to end your current session.