HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview

Germplasm Summary

Accessions
3750

Mapping Populations
1

Experiment Summary

Trials
8

Studies
28

Phenotyping Summary

Observations Variables
181

Metabolites
872

Genotyping Summary

Markers
123560

Genotyping Platforms
4

Variant Studies

QTL Studies
3

GWAS
9

Variant Summary

QTL Variant
21

GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRVI0530

The appearance of whole TRVI0530 plant in UNITUS_summer15

Anatomical Entity: whole plant

TRVI0540

Longitudinal section of TRVI0540 red ripe fruits in UNITUS_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVI0540

Transversal section of TRVI0540 red ripe fruits in UNITUS_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVI0540

Flower of TRVI0540 in UNITUS_summer15

Anatomical Entity: flower

TRVI0540

TRVI0540 red ripe fruits in UNITUS_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVI0540

TRVI0540 red ripe fruits in UNITUS_summer15

Stage: Red ripe Anatomical Entity: fruit

TRVI0540

Inflorescence of TRVI0540 in UNITUS_summer15

Anatomical Entity: inflorescence

TRVI0540

The appearance of whole TRVI0540 plant in UNITUS_summer15

Anatomical Entity: whole plant

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.