HarnessTom Database

HarnesstomDB is a comprehensive publicly available open-source multi-omics database for facilitating the use of the potential of tomato germplasm collections for breeding. HarnesstomDB V1.0 (March 2022) enables to store, integrate and interconnect curated omics data and metadata from different projects, trials and experiments including images using a controlled vocabulary and accepted standards.

Overview

Germplasm Summary

Accessions
17616
Mapping Populations
1

Experiment Summary

Trials
8
Studies
29

Phenotyping Summary

Observations Variables
181
Metabolites
872

Genotyping Summary

Markers
127809
Genotyping Platforms
5

Variant Studies

QTL Studies
3
GWAS
9

Variant Summary

QTL Variant
21
GWAS Variant
773
Accessions by countries
Biological Status Of Accession

Germplasms Some of our germplasms

TRMO0990

TRMO0990 mature green fruits in INRA_summer15

Stage: Mature green Anatomical Entity: fruit

TRMO0990

TRMO0990 red ripe fruits in INRA_summer15

Stage: Red ripe Anatomical Entity: fruit

TRMO0990

Inflorescence of TRMO0990 in INRA_summer15

Anatomical Entity: inflorescence

TRMO0990

Inflorescence of TRMO0990 in INRA_summer15

Anatomical Entity: inflorescence

TRMO1000

Longitudinal section of TRMO1000 red ripe fruits in INRA_summer15

Stage: Red ripe Anatomical Entity: fruit

TRMO1000

Transversal section of TRMO1000 red ripe fruits in INRA_summer15

Stage: Red ripe Anatomical Entity: fruit

TRMO1000

TRMO1000 mature green fruits in INRA_summer15

Stage: Mature green Anatomical Entity: fruit

TRMO1000

TRMO1000 mature green fruits in INRA_summer15

Stage: Mature green Anatomical Entity: fruit

Type of experiment used in HarnessTomDB

Variety trial 38 %

Breeding project 38 %

Environmental factor trial 13 %

Germplasm screening trial 13 %

Survey for designing your ideal tomato

How would you like tomatoes to be? Red, orange, pink, purple, green… ribbed, smooth… pear-shaped, round, flat… very sweet or very acid or both? It’s time to design your perfect tomato! After different research projects we have studied more than 3,000 varieties of tomato. Do you want to help us select the best varieties? It will only take you 5 minutes to answer this survey, but the information that you will provide will last for thousand years… Let’s go?

Videos tutorials

Main sources and collaborators

Below are the project partners & collaborators.